Prof. Christian Milani
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Professor of Microbiology

Prof. Christian Milani

Bioinformatics, comparative genomics, metagenomics and software development.

Biography

Profile

Christian Milani, PhD, is Associate Professor of Microbiology at the University of Parma and Head of the Computational Microbiology Unit within the Probiogenomics Laboratory. His research combines microbiology, bioinformatics and multi-omics approaches to investigate the composition, function and evolution of complex microbial communities, with a particular focus on the human gut microbiota.

His scientific work has primarily addressed the role of the gut microbiome in human health and disease, the development of the microbiota during early life, and the biology and ecology of bifidobacteria and other health-associated microorganisms. He has contributed to the genomic and functional characterization of probiotic bacteria, the investigation of host–microbe and microbe–microbe interactions, and the study of microbial communities associated with humans, animals and fermented foods. A major component of his research involves the development and application of bioinformatic tools for species-level taxonomic profiling, comparative genomics and the functional characterization of metagenomic datasets.

His research activities are highly interdisciplinary and are conducted through extensive national and international collaborations, integrating microbial genomics and metagenomics with transcriptomics, metabolomics, experimental microbiology and host-related measurements. He is also actively involved in teaching and in the supervision of undergraduate, graduate and doctoral students in microbiology, microbial genomics, metagenomics and computational biology.

In recent years, his research interests have increasingly expanded towards the connections between environmental exposures and human health. In particular, he is investigating how the human microbiota interacts with xenobiotics and emerging environmental contaminants, including micro- and nanoplastics, their additives and degradation products. This work aims to understand whether microbial communities contribute to the biotransformation of these compounds and how such interactions may influence microbiome functionality, host physiology and susceptibility to disease.

Scopus

Publications

201 records available
2025Microbiology and Molecular Biology Reviews

Vitamin biosynthesis in the gut: interplay between mammalian host and its resident microbiota

Chiara Tarracchini, Cathy Lordan, Christian Milani, Luiza P.D. Moreira, Qusai M. Alabedallat, Alejandra de Moreno de LeBlanc, Francesca Turroni, Gabriele Andrea Lugli, Leonardo Mancabelli, Giulia Longhi, Lorraine Brennan, Jennifer Mahony, Jean Guy LeBlanc, Kanishka N. Nilaweera, Paul D. Cotter, Douwe van Sinderen, Marco Ventura

2025Applied and Environmental Microbiology

Functional modulation of the human gut microbiome by bacteria vehicled by cheese

Christian Milani, Giulia Longhi, Giulia Alessandri, Federico Fontana, Martina Viglioli, Chiara Tarracchini, Leonardo Mancabelli, Gabriele Andrea Lugli, Silvia Petraro, Chiara Argentini, Rosaria Anzalone, Alice Viappiani, Elisa Carli, Federica Vacondio, Douwe van Sinderen, Francesca Turroni, Marco Mor, Marco Ventura

2023Nature Communications

Genetic strategies for sex-biased persistence of gut microbes across human life

Chiara Tarracchini, Giulia Alessandri, Federico Fontana, Sonia Mirjam Rizzo, Gabriele Andrea Lugli, Massimiliano Giovanni Bianchi, Leonardo Mancabelli, Giulia Longhi, Chiara Argentini, Laura Maria Vergna, Rosaria Anzalone, Alice Viappiani, Francesca Turroni, Giuseppe Taurino, Martina Chiu, Silvia Arboleya, Miguel Gueimonde, Ovidio Bussolati, Douwe van Sinderen, Christian Milani, Marco Ventura

2023Frontiers in Microbiology

Identification of a prototype human gut Bifidobacterium longum subsp. longum strain based on comparative and functional genomic approaches

Giulia Alessandri, Federico Fontana, Chiara Tarracchini, Sonia Mirjam Rizzo, Massimiliano G. Bianchi, Giuseppe Taurino, Martina Chiu, Gabriele Andrea Lugli, Leonardo Mancabelli, Chiara Argentini, Giulia Longhi, Rosaria Anzalone, Alice Viappiani, Christian Milani, Francesca Turroni, Ovidio Bussolati, Douwe van Sinderen, Marco Ventura

2023Intensive Care Medicine Experimental

Changes in upper airways microbiota in ventilator-associated pneumonia

Laura Alagna, Leonardo Mancabelli, Federico Magni, Liliane Chatenoud, Gabriele Bassi, Silvia Del Bianco, Roberto Fumagalli, Francesca Turroni, Davide Mangioni, Guglielmo M. Migliorino, Christian Milani, Antonio Muscatello, Giovanni Nattino, Edoardo Picetti, Riccardo Pinciroli, Sandra Rossi, Tommaso Tonetti, Alessia Vargiolu, Alessandra Bandera, Marco Ventura, Giuseppe Citerio, Andrea Gori

2023Microbiology Spectrum

Disentangling the interactions between nasopharyngeal and gut microbiome and their involvement in the modulation of COVID-19 infection

Leonardo Mancabelli, Giuseppe Taurino, Andrea Ticinesi, Tecla Ciociola, Federica Vacondio, Christian Milani, Federico Fontana, Gabriele Andrea Lugli, Chiara Tarracchini, Giulia Alessandri, Alice Viappiani, Massimiliano Bianchi, Antonio Nouvenne, Alfredo Antonio Chetta, Francesca Turroni, Tiziana Meschi, Marco Mor, Ovidio Bussolati, Marco Ventura

2022Environmental Microbiology

Designation of optimal reference strains representing the infant gut bifidobacterial species through a comprehensive multi-omics approach

Federico Fontana, Giulia Alessandri, Chiara Tarracchini, Massimiliano Giovanni Bianchi, Sonia Mirjam Rizzo, Leonardo Mancabelli, Gabriele Andrea Lugli, Chiara Argentini, Laura Maria Vergna, Rosaria Anzalone, Giulia Longhi, Alice Viappiani, Giuseppe Taurino, Martina Chiu, Francesca Turroni, Ovidio Bussolati, Douwe van Sinderen, Christian Milani, Marco Ventura

2022Microbiome Research Reports

Editors’ Prelude to Microbiome Research Reports

Marco Ventura, Douwe van Sinderen, Francesca Turroni, Christian Milani, Jose Munoz, Dirk Haller, R. Paul Ross, Maria Carmen Collado, Emma Allen-Vercoe, Daniele Del Rio, Eric Altermann, Takane Katayama, Erwin G. Zoetendal, Clara Belzer, Pedro Mena, Sin Hyeog Im, Miguel Gueimonde, Abelardo Margolles, Lorena Ruiz, Christophe Lacroix, Catherine Stanton, Giovani Barbara, Seppo Saminen, Karen P. Scott, Rodolphe Barrangou, Francesca Bottacini, Maria L. Marco

2021Microbiology Spectrum

Unraveling the microbiome of necrotizing enterocolitis: Insights in novel microbial and metabolomic biomarkers

Chiara Tarracchini, Christian Milani, Giulia Longhi, Federico Fontana, Leonardo Mancabelli, Roberta Pintus, Gabriele Andrea Lugli, Giulia Alessandri, Rosaria Anzalone, Alice Viappiani, Francesca Turroni, Michele Mussap, Angelica Dessì, Flaminia Cesare Marincola, Antonio Noto, Anna De Magistris, Marine Vincent, Sergio Bernasconi, Jean Charles Picaud, Vassilios Fanos, Marco Ventura

2021Environmental Microbiology

Vaginotypes of the human vaginal microbiome

Leonardo Mancabelli, Chiara Tarracchini, Christian Milani, Gabriele Andrea Lugli, Federico Fontana, Francesca Turroni, Douwe van Sinderen, Marco Ventura

2021Systematic and Applied Microbiology

Phylogenetic classification of ten novel species belonging to the genus Bifidobacterium comprising B. phasiani sp. nov., B. pongonis sp. nov., B. saguinibicoloris sp. nov., B. colobi sp. nov., B. simiiventris sp. nov., B. santillanense sp. nov., B. miconis sp. nov., B. amazonense sp. nov., B. pluvialisilvae sp. nov., and B. miconisargentati sp. nov

Gabriele Andrea Lugli, Ines Calvete-Torre, Giulia Alessandri, Christian Milani, Francesca Turroni, Paola Laiolo, Maria Cristina Ossiprandi, Abelardo Margolles, Lorena Ruiz, Marco Ventura

2019Nature Communications

Colonization of the human gut by bovine bacteria present in Parmesan cheese

Christian Milani, Sabrina Duranti, Stefania Napoli, Giulia Alessandri, Leonardo Mancabelli, Rosaria Anzalone, Giulia Longhi, Alice Viappiani, Marta Mangifesta, Gabriele Andrea Lugli, Sergio Bernasconi, Maria Cristina Ossiprandi, Douwe van Sinderen, Marco Ventura, Francesca Turroni

2019International Journal of Systematic and Evolutionary Microbiology

Characterization of the phylogenetic diversity of five novel species belonging to the genus Bifidobacterium: Bifidobacterium castoris sp. nov., Bifidobacterium callimiconis sp. nov., Bifidobacterium goeldii sp. nov., Bifidobacterium samirii sp. nov. and Bifidobacterium dolichotidis sp. nov.

Sabrina Duranti, Gabriele Andrea Lugli, Stefania Napoli, Rosaria Anzalone, Christian Milani, Leonardo Mancabelli, Giulia Alessandri, Francesca Turroni, Maria Cristina Ossiprandi, Douwe Van Sinderen, Marco Ventura

2018Cell Host and Microbe

Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome

Pamela Ferretti, Edoardo Pasolli, Adrian Tett, Francesco Asnicar, Valentina Gorfer, Sabina Fedi, Federica Armanini, Duy Tin Truong, Serena Manara, Moreno Zolfo, Francesco Beghini, Roberto Bertorelli, Veronica De Sanctis, Ilaria Bariletti, Rosarita Canto, Rosanna Clementi, Marina Cologna, Tiziana Crifò, Giuseppina Cusumano, Stefania Gottardi, Claudia Innamorati, Caterina Masè, Daniela Postai, Daniela Savoi, Sabrina Duranti, Gabriele Andrea Lugli, Leonardo Mancabelli, Francesca Turroni, Chiara Ferrario, Christian Milani, Marta Mangifesta, Rosaria Anzalone, Alice Viappiani, Moran Yassour, Hera Vlamakis, Ramnik Xavier, Carmen Maria Collado, Omry Koren, Saverio Tateo, Massimo Soffiati, Anna Pedrotti, Marco Ventura, Curtis Huttenhower, Peer Bork, Nicola Segata

2018Systematic and Applied Microbiology

Phylogenetic classification of six novel species belonging to the genus Bifidobacterium comprising Bifidobacterium anseris sp. nov., Bifidobacterium criceti sp. nov., Bifidobacterium imperatoris sp. nov., Bifidobacterium italicum sp. nov., Bifidobacterium margollesii sp. nov. and Bifidobacterium parmae sp. nov.

Gabriele Andrea Lugli, Marta Mangifesta, Sabrina Duranti, Rosaria Anzalone, Christian Milani, Leonardo Mancabelli, Giulia Alessandri, Francesca Turroni, Maria Cristina Ossiprandi, Douwe van Sinderen, Marco Ventura

2017Microbiology and Molecular Biology Reviews

The first microbial colonizers of the human gut: Composition, activities, and health implications of the infant gut microbiota

Christian Milani, Sabrina Duranti, Francesca Bottacini, Eoghan Casey, Francesca Turroni, Jennifer Mahony, Clara Belzer, Susana Delgado Palacio, Silvia Arboleya Montes, Leonardo Mancabelli, Gabriele Andrea Lugli, Juan Miguel Rodriguez, Lars Bode, Willem De Vos, Miguel Gueimonde, Abelardo Margolles, Douwe Van Sinderen, Marco Ventura

2017Microbiome

Maternal inheritance of bifidobacterial communities and bifidophages in infants through vertical transmission

Sabrina Duranti, Gabriele Andrea Lugli, Leonardo Mancabelli, Federica Armanini, Francesca Turroni, Kieran James, Pamela Ferretti, Valentina Gorfer, Chiara Ferrario, Christian Milani, Marta Mangifesta, Rosaria Anzalone, Moreno Zolfo, Alice Viappiani, Edoardo Pasolli, Ilaria Bariletti, Rosarita Canto, Rosanna Clementi, Marina Cologna, Tiziana Crifò, Giuseppina Cusumano, Sabina Fedi, Stefania Gottardi, Claudia Innamorati, Caterina Masè, Daniela Postai, Daniela Savoi, Massimo Soffiati, Saverio Tateo, Anna Pedrotti, Nicola Segata, Douwe Van Sinderen, Marco Ventura

2016FEMS Microbiology Ecology

Elucidating the gut microbiome of ulcerative colitis: Bifidobacteria as novel microbial biomarkers

Sabrina Duranti, Federica Gaiani, Leonardo Mancabelli, Christian Milani, Andrea Grandi, Angelo Bolchi, Andrea Santoni, Gabriele Andrea Lugli, Chiara Ferrario, Marta Mangifesta, Alice Viappiani, Simona Bertoni, Valentina Vivo, Fausta Serafini, Maria Raffaella Barbaro, Alessandro Fugazza, Giovanni Barbara, Laura Gioiosa, Paola Palanza, Anna Maria Cantoni, Gian Luigi de’Angelis, Elisabetta Barocelli, Nicola de'Angelis, Douwe van Sinderen, Marco Ventura, Francesca Turroni

2015Scientific Reports

Bifidobacteria exhibit social behavior through carbohydrate resource sharing in the gut

Christian Milani, Gabriele Andrea Lugli, Sabrina Duranti, Francesca Turroni, Leonardo Mancabelli, Chiara Ferrario, Marta Mangifesta, Arancha Hevia, Alice Viappiani, Matthias Scholz, Stefania Arioli, Borja Sanchez, Jonathan Lane, Doyle V. Ward, Rita Hickey, Diego Mora, Nicola Segata, Abelardo Margolles, Douwe Van Sinderen, Marco Ventura

2015Applied and Environmental Microbiology

Exploring vertical transmission of bifidobacteria from mother to child

Christian Milani, Leonardo Mancabelli, Gabriele Andrea Lugli, Sabrina Duranti, Francesca Turroni, Chiara Ferrario, Marta Mangifesta, Alice Viappiani, Pamela Ferretti, Valentina Gorfer, Adrian Tett, Nicola Segata, Douwe van Sinderen, Marco Ventura

2014Applied and Environmental Microbiology

Genomic encyclopedia of type strains of the genus Bifidobacterium

Christian Milani, Gabriele Andrea Lugli, Sabrina Duranti, Francesca Turroni, Francesca Bottacini, Marta Mangifesta, Borja Sanchez, Alice Viappiani, Leonardo Mancabelli, Bernard Taminiau, Véronique Delcenserie, Rodolphe Barrangou, Abelardo Margolles, Douwe van Sinderen, Marco Ventura

2014BMC Genomics

Comparative genomics of the Bifidobacterium breve taxon

Francesca Bottacini, Mary O'Connell Motherway, Justin Kuczynski, Kerry J. O'Connell, Fausta Serafini, Sabrina Duranti, Christian Milani, Francesca Turroni, Gabriele A. Lugli, Aldert Zomer, Daria Zhurina, Christian Riedel, Marco Ventura, Douwe V. Sinderen

2013Proceedings of the National Academy of Sciences of the United States of America

Role of sortase-dependent pili of Bifidobacterium bifidum PRL2010 in modulating bacterium-host interactions

Francesca Turroni, Fausta Serafini, Elena Foroni, Sabrina Duranti, Mary O.Connell Motherway, Valentina Taverniti, Marta Mangifesta, Christian Milani, Alice Viappiani, Tommaso Roversi, Borja Sańchez, Andrea Santoni, Laura Gioiosa, Alberto Ferrarini, Massimo Delledonne, Abelardo Margolles, Laura Piazza, Paola Palanza, Angelo Bolchi, Simone Guglielmetti, Douwe Van Sinderen, Marco Ventura