Prof. Leonardo Mancabelli
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Professor of Microbiology

Prof. Leonardo Mancabelli

Metagenomics, microbial biodiversity, microbiota ecology and multi-omics.

Biography

Profile

Assistant Professor (RTT; SSD BIOS-15/A, former BIO/19) at the Department of Medicine and Surgery, University of Parma, and member of the interdepartmental research centre “Microbiome Research Hub”. Research activity focuses on the use of omics approaches (metagenomics, genomics and transcriptomics) and bioinformatics to investigate the human microbiota (including extra-intestinal sites) and its interactions with the host, with particular emphasis on gut bacteria, bifidobacteria and Lactic Acid Bacteria (LAB).

Main research topics
• Human microbiota across different body sites
• Microbiota and interactions with the environment
• Genomics and functional genomics of probiotic bacteria and interactions with the human host
• Metagenomics and bioinformatics applied to microbial communities

Education and qualifications
2012: Bachelor’s degree in Biotechnology, University of Parma (24/02/2012).
2013: Master’s degree in Medical, Veterinary and Pharmaceutical Biotechnology, University of Parma (09/12/2013).
2014–2017: PhD in Biotechnology and Biosciences, University of Parma; research focused on intestinal bacteria in human and animal health.
2023: Italian National Scientific Qualification (Abilitazione Scientifica Nazionale, ASN) for Associate Professor in SSD BIOS-15/A (former SSD BIO/19) – Microbiology.

Academic positions and affiliations
2019–2022: Research fellow, Probiogenomics laboratory, University of Parma.
2022–2026: Assistant Professor (RTD-A; SSD BIOS-15/A, former SSD BIO/19), Department of Medicine and Surgery, University of Parma.
2026–present: Assistant Professor (RTT; SSD BIOS-15/A, former SSD BIO/19), Department of Medicine and Surgery, University of Parma.
2022–present: Member, interdepartmental research centre “Microbiome Research Hub” (University of Parma).

Affiliation to scientific societies
Since 2023: Affiliate Member, Microbiology Society.
Since 2015: Member, Società Italiana di Microbiologia Generale e Biotecnologie Microbiche (SIMGBM).

Research activity
Research activity (since 2014) focuses on the application of omics techniques (metagenomics, genomics and transcriptomics) to investigate correlations between the microbiota of different body sites and physiological/pathological conditions, in humans and in other hosts (including farm and companion animals) for their relevance to human health. Additional lines of research include genomics and functional genomics of intestinal bacteria and bacteria from other body sites (e.g., vaginal and lung microbiota), with a particular focus on bifidobacteria and Lactic Acid Bacteria (LAB).

Scopus

Publications

164 records available
2026Microbiology Spectrum

Microbial signatures and host immune responses associated with the development of ventilator-associated pneumonia among patients with neurological injuries

Leonardo Mancabelli, Emanuele Palomba, Federico Magni, Liliane Chatenoud, Ilaria Olgiati, Chiara Buracchi, Cristina Bugarin, Giuseppe Gaipa, Chiara Abbruzzese, Matteo Filippini, Andrea Forastieri, Roberto Fumagalli, Federico Geraldini, Edoardo Picetti, Leonardo Terranova, Rosanna Vaschetto, Tommaso Zoerle, Marco Ventura, Giuseppe Citerio, Andrea Gori, Alessandra Bandera, Laura Alagna, Francesca Turroni

2025Microbiology and Molecular Biology Reviews

Vitamin biosynthesis in the gut: interplay between mammalian host and its resident microbiota

Chiara Tarracchini, Cathy Lordan, Christian Milani, Luiza P.D. Moreira, Qusai M. Alabedallat, Alejandra de Moreno de LeBlanc, Francesca Turroni, Gabriele Andrea Lugli, Leonardo Mancabelli, Giulia Longhi, Lorraine Brennan, Jennifer Mahony, Jean Guy LeBlanc, Kanishka N. Nilaweera, Paul D. Cotter, Douwe van Sinderen, Marco Ventura

2025Applied and Environmental Microbiology

Functional modulation of the human gut microbiome by bacteria vehicled by cheese

Christian Milani, Giulia Longhi, Giulia Alessandri, Federico Fontana, Martina Viglioli, Chiara Tarracchini, Leonardo Mancabelli, Gabriele Andrea Lugli, Silvia Petraro, Chiara Argentini, Rosaria Anzalone, Alice Viappiani, Elisa Carli, Federica Vacondio, Douwe van Sinderen, Francesca Turroni, Marco Mor, Marco Ventura

2023Nature Communications

Genetic strategies for sex-biased persistence of gut microbes across human life

Chiara Tarracchini, Giulia Alessandri, Federico Fontana, Sonia Mirjam Rizzo, Gabriele Andrea Lugli, Massimiliano Giovanni Bianchi, Leonardo Mancabelli, Giulia Longhi, Chiara Argentini, Laura Maria Vergna, Rosaria Anzalone, Alice Viappiani, Francesca Turroni, Giuseppe Taurino, Martina Chiu, Silvia Arboleya, Miguel Gueimonde, Ovidio Bussolati, Douwe van Sinderen, Christian Milani, Marco Ventura

2023Frontiers in Microbiology

Identification of a prototype human gut Bifidobacterium longum subsp. longum strain based on comparative and functional genomic approaches

Giulia Alessandri, Federico Fontana, Chiara Tarracchini, Sonia Mirjam Rizzo, Massimiliano G. Bianchi, Giuseppe Taurino, Martina Chiu, Gabriele Andrea Lugli, Leonardo Mancabelli, Chiara Argentini, Giulia Longhi, Rosaria Anzalone, Alice Viappiani, Christian Milani, Francesca Turroni, Ovidio Bussolati, Douwe van Sinderen, Marco Ventura

2023Intensive Care Medicine Experimental

Changes in upper airways microbiota in ventilator-associated pneumonia

Laura Alagna, Leonardo Mancabelli, Federico Magni, Liliane Chatenoud, Gabriele Bassi, Silvia Del Bianco, Roberto Fumagalli, Francesca Turroni, Davide Mangioni, Guglielmo M. Migliorino, Christian Milani, Antonio Muscatello, Giovanni Nattino, Edoardo Picetti, Riccardo Pinciroli, Sandra Rossi, Tommaso Tonetti, Alessia Vargiolu, Alessandra Bandera, Marco Ventura, Giuseppe Citerio, Andrea Gori

2023Journal of Hospital Infection

Comparison of multiple definitions for ventilator-associated pneumonia in patients requiring mechanical ventilation for non-pulmonary conditions: preliminary data from PULMIVAP, an Italian multi-centre cohort study

L. Alagna, E. Palomba, L. Chatenoud, R. Massafra, F. Magni, L. Mancabelli, S. Donnini, F. Elli, A. Forastieri, G. Gaipa, C. Abbruzzese, R. Fumagalli, M. Munari, A. Panacea, E. Picetti, L. Terranova, F. Turroni, R. Vaschetto, T. Zoerle, G. Citerio, A. Gori, A. Bandera

2023Microbiology Spectrum

Disentangling the interactions between nasopharyngeal and gut microbiome and their involvement in the modulation of COVID-19 infection

Leonardo Mancabelli, Giuseppe Taurino, Andrea Ticinesi, Tecla Ciociola, Federica Vacondio, Christian Milani, Federico Fontana, Gabriele Andrea Lugli, Chiara Tarracchini, Giulia Alessandri, Alice Viappiani, Massimiliano Bianchi, Antonio Nouvenne, Alfredo Antonio Chetta, Francesca Turroni, Tiziana Meschi, Marco Mor, Ovidio Bussolati, Marco Ventura

2022Environmental Microbiology

Designation of optimal reference strains representing the infant gut bifidobacterial species through a comprehensive multi-omics approach

Federico Fontana, Giulia Alessandri, Chiara Tarracchini, Massimiliano Giovanni Bianchi, Sonia Mirjam Rizzo, Leonardo Mancabelli, Gabriele Andrea Lugli, Chiara Argentini, Laura Maria Vergna, Rosaria Anzalone, Giulia Longhi, Alice Viappiani, Giuseppe Taurino, Martina Chiu, Francesca Turroni, Ovidio Bussolati, Douwe van Sinderen, Christian Milani, Marco Ventura

2021Microbiology Spectrum

Unraveling the microbiome of necrotizing enterocolitis: Insights in novel microbial and metabolomic biomarkers

Chiara Tarracchini, Christian Milani, Giulia Longhi, Federico Fontana, Leonardo Mancabelli, Roberta Pintus, Gabriele Andrea Lugli, Giulia Alessandri, Rosaria Anzalone, Alice Viappiani, Francesca Turroni, Michele Mussap, Angelica Dessì, Flaminia Cesare Marincola, Antonio Noto, Anna De Magistris, Marine Vincent, Sergio Bernasconi, Jean Charles Picaud, Vassilios Fanos, Marco Ventura

2021Environmental Microbiology

Vaginotypes of the human vaginal microbiome

Leonardo Mancabelli, Chiara Tarracchini, Christian Milani, Gabriele Andrea Lugli, Federico Fontana, Francesca Turroni, Douwe van Sinderen, Marco Ventura

2021International Journal of Systematic and Evolutionary Microbiology

Five novel bifidobacterial species isolated from faeces of primates in two czech zoos: Bifidobacterium erythrocebi sp. nov., bifidobacterium moraviense sp. nov., bifidobacterium oedipodis sp. nov., bifidobacterium olomucense sp. nov. and bifidobacterium panos sp. nov.

Vera Neuzil-Bunesova, Gabriele Andrea Lugli, Nikol Modrackova, Eva Vlkova, Petra Bolechova, Johanna Burtscher, Giulia Longhi, Leonardo Mancabelli, Jiri Killer, Konrad Domig, Marco Ventura

2019Nature Communications

Colonization of the human gut by bovine bacteria present in Parmesan cheese

Christian Milani, Sabrina Duranti, Stefania Napoli, Giulia Alessandri, Leonardo Mancabelli, Rosaria Anzalone, Giulia Longhi, Alice Viappiani, Marta Mangifesta, Gabriele Andrea Lugli, Sergio Bernasconi, Maria Cristina Ossiprandi, Douwe van Sinderen, Marco Ventura, Francesca Turroni

2019International Journal of Systematic and Evolutionary Microbiology

Characterization of the phylogenetic diversity of five novel species belonging to the genus Bifidobacterium: Bifidobacterium castoris sp. nov., Bifidobacterium callimiconis sp. nov., Bifidobacterium goeldii sp. nov., Bifidobacterium samirii sp. nov. and Bifidobacterium dolichotidis sp. nov.

Sabrina Duranti, Gabriele Andrea Lugli, Stefania Napoli, Rosaria Anzalone, Christian Milani, Leonardo Mancabelli, Giulia Alessandri, Francesca Turroni, Maria Cristina Ossiprandi, Douwe Van Sinderen, Marco Ventura

2018Cell Host and Microbe

Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome

Pamela Ferretti, Edoardo Pasolli, Adrian Tett, Francesco Asnicar, Valentina Gorfer, Sabina Fedi, Federica Armanini, Duy Tin Truong, Serena Manara, Moreno Zolfo, Francesco Beghini, Roberto Bertorelli, Veronica De Sanctis, Ilaria Bariletti, Rosarita Canto, Rosanna Clementi, Marina Cologna, Tiziana Crifò, Giuseppina Cusumano, Stefania Gottardi, Claudia Innamorati, Caterina Masè, Daniela Postai, Daniela Savoi, Sabrina Duranti, Gabriele Andrea Lugli, Leonardo Mancabelli, Francesca Turroni, Chiara Ferrario, Christian Milani, Marta Mangifesta, Rosaria Anzalone, Alice Viappiani, Moran Yassour, Hera Vlamakis, Ramnik Xavier, Carmen Maria Collado, Omry Koren, Saverio Tateo, Massimo Soffiati, Anna Pedrotti, Marco Ventura, Curtis Huttenhower, Peer Bork, Nicola Segata

2018Systematic and Applied Microbiology

Phylogenetic classification of six novel species belonging to the genus Bifidobacterium comprising Bifidobacterium anseris sp. nov., Bifidobacterium criceti sp. nov., Bifidobacterium imperatoris sp. nov., Bifidobacterium italicum sp. nov., Bifidobacterium margollesii sp. nov. and Bifidobacterium parmae sp. nov.

Gabriele Andrea Lugli, Marta Mangifesta, Sabrina Duranti, Rosaria Anzalone, Christian Milani, Leonardo Mancabelli, Giulia Alessandri, Francesca Turroni, Maria Cristina Ossiprandi, Douwe van Sinderen, Marco Ventura

2017Microbiology and Molecular Biology Reviews

The first microbial colonizers of the human gut: Composition, activities, and health implications of the infant gut microbiota

Christian Milani, Sabrina Duranti, Francesca Bottacini, Eoghan Casey, Francesca Turroni, Jennifer Mahony, Clara Belzer, Susana Delgado Palacio, Silvia Arboleya Montes, Leonardo Mancabelli, Gabriele Andrea Lugli, Juan Miguel Rodriguez, Lars Bode, Willem De Vos, Miguel Gueimonde, Abelardo Margolles, Douwe Van Sinderen, Marco Ventura

2017Microbiome

Maternal inheritance of bifidobacterial communities and bifidophages in infants through vertical transmission

Sabrina Duranti, Gabriele Andrea Lugli, Leonardo Mancabelli, Federica Armanini, Francesca Turroni, Kieran James, Pamela Ferretti, Valentina Gorfer, Chiara Ferrario, Christian Milani, Marta Mangifesta, Rosaria Anzalone, Moreno Zolfo, Alice Viappiani, Edoardo Pasolli, Ilaria Bariletti, Rosarita Canto, Rosanna Clementi, Marina Cologna, Tiziana Crifò, Giuseppina Cusumano, Sabina Fedi, Stefania Gottardi, Claudia Innamorati, Caterina Masè, Daniela Postai, Daniela Savoi, Massimo Soffiati, Saverio Tateo, Anna Pedrotti, Nicola Segata, Douwe Van Sinderen, Marco Ventura

2016FEMS Microbiology Ecology

Elucidating the gut microbiome of ulcerative colitis: Bifidobacteria as novel microbial biomarkers

Sabrina Duranti, Federica Gaiani, Leonardo Mancabelli, Christian Milani, Andrea Grandi, Angelo Bolchi, Andrea Santoni, Gabriele Andrea Lugli, Chiara Ferrario, Marta Mangifesta, Alice Viappiani, Simona Bertoni, Valentina Vivo, Fausta Serafini, Maria Raffaella Barbaro, Alessandro Fugazza, Giovanni Barbara, Laura Gioiosa, Paola Palanza, Anna Maria Cantoni, Gian Luigi de’Angelis, Elisabetta Barocelli, Nicola de'Angelis, Douwe van Sinderen, Marco Ventura, Francesca Turroni

2015Scientific Reports

Bifidobacteria exhibit social behavior through carbohydrate resource sharing in the gut

Christian Milani, Gabriele Andrea Lugli, Sabrina Duranti, Francesca Turroni, Leonardo Mancabelli, Chiara Ferrario, Marta Mangifesta, Arancha Hevia, Alice Viappiani, Matthias Scholz, Stefania Arioli, Borja Sanchez, Jonathan Lane, Doyle V. Ward, Rita Hickey, Diego Mora, Nicola Segata, Abelardo Margolles, Douwe Van Sinderen, Marco Ventura

2015Applied and Environmental Microbiology

Exploring vertical transmission of bifidobacteria from mother to child

Christian Milani, Leonardo Mancabelli, Gabriele Andrea Lugli, Sabrina Duranti, Francesca Turroni, Chiara Ferrario, Marta Mangifesta, Alice Viappiani, Pamela Ferretti, Valentina Gorfer, Adrian Tett, Nicola Segata, Douwe van Sinderen, Marco Ventura

2014Applied and Environmental Microbiology

Genomic encyclopedia of type strains of the genus Bifidobacterium

Christian Milani, Gabriele Andrea Lugli, Sabrina Duranti, Francesca Turroni, Francesca Bottacini, Marta Mangifesta, Borja Sanchez, Alice Viappiani, Leonardo Mancabelli, Bernard Taminiau, Véronique Delcenserie, Rodolphe Barrangou, Abelardo Margolles, Douwe van Sinderen, Marco Ventura